Explain him that you did sell tobacco but you were in training... and it happened by mistake.... and assure him that it will not happen in future...
Don't repeat same mistake in probation period. After probation period your case will be dismissed and it will not appear in your background check..
I think in the court they will not ask about your F1 status and you also don't have to mentioned
about it. They will just ask about your case ie. selling tobacco to minor.
If you like you can continue to work in the same store, it will not affect your case.
This is just my opinion. I hope it helps.