Instead of SQL Profiler, You can use Server-side trace which can be scheduled and less resource intensive.Here is my script for Server-Side trace :

--Stored Procedure to run trace for 30 minutes
Create Procedure dbo.Usp_Tracefor30minutes
as
set nocount on

declare @stop datetime
set @stop = dateadd(mi,30,getdate())
declare @rc int
declare @TraceID int
declare @maxfilesize bigint
set @maxfilesize = 50
-- create traces and saves in folder specified
exec @rc = sp_trace_create @TraceID output, 0, N'InsertFileNameHere', @maxfilesize, @stop
if (@rc != 0) goto error
-- Set the events
declare @on bit
set @on = 1
exec sp_trace_setevent @TraceID, 17, 12, @on
exec sp_trace_setevent @TraceID, 17, 1, @on
exec sp_trace_setevent @TraceID, 17, 9, @on
exec sp_trace_setevent @TraceID, 17, 6, @on -- 17 - Existing Connections
exec sp_trace_setevent @TraceID, 17, 10, @on
exec sp_trace_setevent @TraceID, 17, 14, @on
exec sp_trace_setevent @TraceID, 17, 11, @on
exec sp_trace_setevent @TraceID, 10, 15, @on
exec sp_trace_setevent @TraceID, 10, 16, @on
exec sp_trace_setevent @TraceID, 10, 1, @on -- 10 - RPC:Completed
exec sp_trace_setevent @TraceID, 10, 17, @on
exec sp_trace_setevent @TraceID, 10, 2, @on
exec sp_trace_setevent @TraceID, 10, 10, @on
exec sp_trace_setevent @TraceID, 10, 18, @on
exec sp_trace_setevent @TraceID, 10, 11, @on
exec sp_trace_setevent @TraceID, 10, 12, @on
exec sp_trace_setevent @TraceID, 10, 13, @on
exec sp_trace_setevent @TraceID, 10, 6, @on
exec sp_trace_setevent @TraceID, 10, 14, @on
exec sp_trace_setevent @TraceID, 43, 15, @on
exec sp_trace_setevent @TraceID, 43, 1, @on
exec sp_trace_setevent @TraceID, 43, 9, @on -- 43 - SP:Completed
exec sp_trace_setevent @TraceID, 43, 10, @on
exec sp_trace_setevent @TraceID, 43, 11, @on
exec sp_trace_setevent @TraceID, 43, 12, @on
exec sp_trace_setevent @TraceID, 43, 13, @on
exec sp_trace_setevent @TraceID, 43, 6, @on
exec sp_trace_setevent @TraceID, 43, 14, @on
exec sp_trace_setevent @TraceID, 37, 1, @on
exec sp_trace_setevent @TraceID, 37, 9, @on
exec sp_trace_setevent @TraceID, 37, 6, @on -- 37 - SP:Recompile
exec sp_trace_setevent @TraceID, 37, 10, @on
exec sp_trace_setevent @TraceID, 37, 14, @on
exec sp_trace_setevent @TraceID, 37, 11, @on
exec sp_trace_setevent @TraceID, 37, 12, @on
exec sp_trace_setevent @TraceID, 12, 15, @on
exec sp_trace_setevent @TraceID, 12, 16, @on
exec sp_trace_setevent @TraceID, 12, 1, @on -- 12 - SQL:BatchCompleted
exec sp_trace_setevent @TraceID, 12, 9, @on
exec sp_trace_setevent @TraceID, 12, 17, @on
exec sp_trace_setevent @TraceID, 12, 6, @on
exec sp_trace_setevent @TraceID, 12, 10, @on
exec sp_trace_setevent @TraceID, 12, 14, @on
exec sp_trace_setevent @TraceID, 12, 18, @on
exec sp_trace_setevent @TraceID, 12, 11, @on
exec sp_trace_setevent @TraceID, 12, 12, @on
exec sp_trace_setevent @TraceID, 12, 13, @on
exec sp_trace_setevent @TraceID, 13, 12, @on
exec sp_trace_setevent @TraceID, 13, 1, @on
exec sp_trace_setevent @TraceID, 13, 9, @on -- 13 - SQL :BatchStarting
exec sp_trace_setevent @TraceID, 13, 6, @on
exec sp_trace_setevent @TraceID, 13, 10, @on
exec sp_trace_setevent @TraceID, 13, 14, @on
exec sp_trace_setevent @TraceID, 13, 11, @on
 
-- Set the Filters
declare @intfilter int
declare @bigintfilter bigint
exec sp_trace_setfilter @TraceID, 10, 0, 7, N'SQL Server Profiler'
set @bigintfilter = 5000
exec sp_trace_setfilter @TraceID, 13, 0, 4, @bigintfilter
-- Set the trace status to start
exec sp_trace_setstatus @TraceID, 1
-- display trace id for future references
select TraceID=@TraceID
goto finish
error:
select ErrorCode=@rc
finish:
go

You can find me in SQLteam.com under name sodeep. There are lots of microsoft MVP and we deal with these issues on regular basis.