I don’t think so. Legally speaking you should be okay however with the Nepali passport they might try to give you a hard time. I remember going to UK via Delhi and got questioned more by the immigration officer in Delhi more than border control in UK. Ultimately they cannot stop you from traveling but just be prepared to answer questions like why did you come to India, how long did you stay, where did you go & how you got the RTD.
I’m assuming you are planning to go to Nepal(you don’t have to answer). Just be prepared. It’s not easy like before just prepare yourself.